""" Include Bokeh plots in Sphinx HTML documentation. For other output types, the placeholder text ``[graph]`` will be generated. The ``bokeh-plot`` directive can be used by either supplying: **A path to a source file** as the argument to the directive:: .. bokeh-plot:: path/to/plot.py .. note:: .py scripts are not scanned automatically! In order to include certain directories into .py scanning process use following directive in sphinx conf.py file: bokeh_plot_pyfile_include_dirs = ["dir1","dir2"] **Inline code** as the content of the directive:: .. bokeh-plot:: from bokeh.plotting import figure, output_file, show output_file("example.html") x = [1, 2, 3, 4, 5] y = [6, 7, 6, 4, 5] p = figure(title="example", plot_width=300, plot_height=300) p.line(x, y, line_width=2) p.circle(x, y, size=10, fill_color="white") show(p) This directive also works in conjunction with Sphinx autodoc, when used in docstrings. The ``bokeh-plot`` directive accepts the following options: source-position : enum('above', 'below', 'none') Where to locate the the block of formatted source code (if anywhere). linenos : flag Whether to display line numbers along with the source. Examples -------- The inline example code above produces the following output: .. bokeh-plot:: from bokeh.plotting import figure, output_file, show output_file("example.html") x = [1, 2, 3, 4, 5] y = [6, 7, 6, 4, 5] p = figure(title="example", plot_width=300, plot_height=300) p.line(x, y, line_width=2) p.circle(x, y, size=10, fill_color="white") show(p) """ from __future__ import absolute_import import ast from os import getenv from os.path import basename, dirname, join import re from uuid import uuid4 from docutils import nodes from docutils.parsers.rst import Directive, Parser from docutils.parsers.rst.directives import choice, flag from sphinx.errors import SphinxError from sphinx.util import copyfile, ensuredir, status_iterator from sphinx.util.nodes import set_source_info from ..document import Document from ..embed import autoload_static from ..model import Model from ..resources import Resources from ..settings import settings from ..util.string import decode_utf8 from .example_handler import ExampleHandler from .templates import PLOT_PAGE docs_cdn = settings.docs_cdn() # if BOKEH_DOCS_CDN is unset just use default CDN resources if docs_cdn is None: resources = Resources(mode="cdn") else: # "BOKEH_DOCS_CDN=local" is used for building and displaying the docs locally if docs_cdn == "local": resources = Resources(mode="server", root_url="/en/latest/") # "BOKEH_DOCS_CDN=test:newthing" is used for building and deploying test docs to # a one-off location "en/newthing" on the docs site elif docs_cdn.startswith("test:"): resources = Resources(mode="server", root_url="/en/%s/" % docs_cdn.split(":")[1]) # Otherwise assume it is a dev/rc/full release version and use CDN for it else: resources = Resources(mode="cdn", version=docs_cdn) CODING = re.compile(r"^# -\*- coding: (.*) -\*-$", re.M) class PlotScriptError(SphinxError): """ Error during script parsing. """ category = 'PlotScript error' def _process_script(source, filename, env, js_name, use_relative_paths=False): # This is lame, but seems to be required for python 2 source = CODING.sub("", source) # Explicitly make sure old extensions are not included until a better # automatic mechanism is available Model._clear_extensions() # quick and dirty way to inject Google API key if "GOOGLE_API_KEY" in source: GOOGLE_API_KEY = getenv('GOOGLE_API_KEY') if GOOGLE_API_KEY is None: if env.config.bokeh_missing_google_api_key_ok: GOOGLE_API_KEY = "MISSING_API_KEY" else: raise SphinxError("The GOOGLE_API_KEY environment variable is not set. Set GOOGLE_API_KEY to a valid API key, " "or set bokeh_missing_google_api_key_ok=True in conf.py to build anyway (with broken GMaps)") run_source = source.replace("GOOGLE_API_KEY", GOOGLE_API_KEY) else: run_source = source c = ExampleHandler(source=run_source, filename=filename) d = Document() c.modify_document(d) if c.error: raise PlotScriptError(c.error_detail) script_path = None if(use_relative_paths): script_path = join("$REL_PATH$", js_name) else: script_path = join("/scripts", js_name) js_path = join(env.bokeh_plot_auxdir, js_name) js, script = autoload_static(d.roots[0], resources, script_path) with open(js_path, "w") as f: f.write(js) return (script, js, js_path, source) def _get_file_depth_string(docname): """Get relative path string of file containing directive""" pre_path = '' depth = docname.count('/') if depth is None: pre_path = '' else: pre_path = ''.join(['../'] * depth) return pre_path class PlotScriptParser(Parser): """ This Parser recognizes .py files in the Sphinx source tree, assuming that they contain bokeh examples Note: it is important that the .py files are parsed first. This is accomplished by reordering the doc names in the env_before_read_docs callback """ supported = ('python',) def parse(self, source, document): """ Parse ``source``, write results to ``document``. """ # This is lame, but seems to be required for python 2 source = CODING.sub("", source) env = document.settings.env filename = env.doc2path(env.docname) # e.g. full path to docs/user_guide/examples/layout_vertical # This code splits the source into two parts: the docstring (or None if # there is not one), and the remaining source code after m = ast.parse(source) docstring = ast.get_docstring(m) if docstring is not None: lines = source.split("\n") lineno = m.body[0].lineno # assumes docstring is m.body[0] source = "\n".join(lines[lineno:]) js_name = "bokeh-plot-%s.js" % uuid4().hex (script, js, js_path, source) = _process_script(source, filename, env, js_name, env.config.bokeh_plot_use_relative_paths) env.bokeh_plot_files[env.docname] = (script, js, js_path, source) rst = PLOT_PAGE.render(source=source, filename=basename(filename), docstring=docstring, script=script) document['bokeh_plot_include_bokehjs'] = True # can't use super, Sphinx Parser classes don't inherit object Parser.parse(self, rst, document) class BokehPlotDirective(Directive): has_content = True optional_arguments = 2 option_spec = { 'source-position': lambda x: choice(x, ('below', 'above', 'none')), 'linenos': lambda x: True if flag(x) is None else False, } def run(self): env = self.state.document.settings.env app = env.app # filename *or* python code content, but not both if self.arguments and self.content: raise SphinxError("bokeh-plot:: directive can't have both args and content") # process inline examples here if self.content: app.debug("[bokeh-plot] handling inline example in %r", env.docname) source = '\n'.join(self.content) # need docname not to look like a path docname = env.docname.replace("/", "-") js_name = "bokeh-plot-%s-inline-%s.js" % (docname, uuid4().hex) # the code runner just needs a real path to cd to, this will do path = join(env.bokeh_plot_auxdir, js_name) (script, js, js_path, source) = _process_script(source, path, env, js_name, env.config.bokeh_plot_use_relative_paths) if(env.config.bokeh_plot_use_relative_paths): script = script.replace('$REL_PATH$', _get_file_depth_string(env.docname) + 'scripts') env.bokeh_plot_files[js_name] = (script, js, js_path, source) # process example files here else: example_path = self.arguments[0][:-3] # remove the ".py" # if it's an "internal" example, the python parser has already handled it if example_path in env.bokeh_plot_files: app.debug("[bokeh-plot] handling internal example in %r: %s", env.docname, self.arguments[0]) (script, js, js_path, source) = env.bokeh_plot_files[example_path] if(env.config.bokeh_plot_use_relative_paths): script = script.replace('$REL_PATH$', _get_file_depth_string(env.docname) + 'scripts') # handle examples external to the docs source, e.g. gallery examples else: app.debug("[bokeh-plot] handling external example in %r: %s", env.docname, self.arguments[0]) source = open(self.arguments[0]).read() source = decode_utf8(source) docname = env.docname.replace("/", "-") js_name = "bokeh-plot-%s-external-%s.js" % (docname, uuid4().hex) (script, js, js_path, source) = _process_script(source, self.arguments[0], env, js_name, env.config.bokeh_plot_use_relative_paths) if(env.config.bokeh_plot_use_relative_paths): script = script.replace('$REL_PATH$', _get_file_depth_string(env.docname) + 'scripts') env.bokeh_plot_files[js_name] = (script, js, js_path, source) # use the source file name to construct a friendly target_id target_id = "%s.%s" % (env.docname, basename(js_path)) target = nodes.target('', '', ids=[target_id]) result = [target] linenos = self.options.get('linenos', False) code = nodes.literal_block(source, source, language="python", linenos=linenos, classes=[]) set_source_info(self, code) source_position = self.options.get('source-position', 'below') if source_position == "above": result += [code] result += [nodes.raw('', script, format="html")] if source_position == "below": result += [code] return result def env_before_read_docs(app, env, docnames): # sort to make sure the custom Python file parser gets to process any plot # scripts first, since it will save the plot output for use later. docnames.sort(key=lambda x: 0 if env.doc2path(x).endswith(".py") else 1) for name in [x for x in docnames if env.doc2path(x).endswith(".py")]: if not name.startswith(tuple(env.app.config.bokeh_plot_pyfile_include_dirs)): env.found_docs.remove(name) docnames.remove(name) def builder_inited(app): app.env.bokeh_plot_auxdir = join(app.env.doctreedir, 'bokeh_plot') ensuredir(app.env.bokeh_plot_auxdir) # sphinx/_build/doctrees/bokeh_plot if not hasattr(app.env, 'bokeh_plot_files'): app.env.bokeh_plot_files = {} def html_page_context(app, pagename, templatename, context, doctree): """ Add BokehJS to pages that contain plots. """ if doctree and doctree.get('bokeh_plot_include_bokehjs'): context['bokeh_css_files'] = resources.css_files context['bokeh_js_files'] = resources.js_files def build_finished(app, exception): files = set() for (script, js, js_path, source) in app.env.bokeh_plot_files.values(): files.add(js_path) files_iter = status_iterator(sorted(files), 'copying bokeh-plot files... ', 'brown', len(files), stringify_func=lambda x: basename(x)) for file in files_iter: target = join(app.builder.outdir, "scripts", basename(file)) ensuredir(dirname(target)) try: copyfile(file, target) except OSError as e: raise SphinxError('cannot copy local file %r, reason: %s' % (file, e)) def env_purge_doc(app, env, docname): """ Remove local files for a given document. """ if docname in env.bokeh_plot_files: del env.bokeh_plot_files[docname] def setup(app): """ sphinx config variable to scan .py files in provided directories only """ app.add_config_value('bokeh_plot_pyfile_include_dirs', [], 'html') app.add_config_value('bokeh_plot_use_relative_paths', False, 'html') app.add_config_value('bokeh_missing_google_api_key_ok', True, 'html') app.add_source_parser('.py', PlotScriptParser) app.add_directive('bokeh-plot', BokehPlotDirective) app.connect('env-before-read-docs', env_before_read_docs) app.connect('builder-inited', builder_inited) app.connect('html-page-context', html_page_context) app.connect('build-finished', build_finished) app.connect('env-purge-doc', env_purge_doc)